MIDL 2021

 
International Conference on
Medical Imaging with Deep Learning
5. bis 7. Juli 2021

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Germer S., Lambarki M., Ulrich H., Ingenerf J., Lablans M.
Visualization and Exploration of Integrated Patient Data
In: Buzug T.M., Handels H., Hübner C., Klein S., Mertins A., Rostalski P. (eds.), Student Conference Proceedings 2021: Medical Engineering Science, Medical Informatics, Biomedical Engineering, Auditory Technology, Biophysics and Robotics and Autonomous Systems, Lübeck, Infinite Science Publishing, 359-362, 2021
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Ulrich H., Kock-Schoppenhauer A.-K., Duhm-Harbeck P., Ingenerf J.
Using Graph Tools on Metadata Repositories
Studies in health technology and informatics, 253, 55-59, 2018
Abstract
Drenkhahn C.M., Burmester S., Ballout S., Ulrich H., Wiedekopf J., Ingenerf J.
Using FHIR terminology services-based tools for mapping of local microbiological pathogen terms to SNOMED CT at a German university hospital
In: DVMD-Fokus: Datenzugriff und -bereitstellung, Leipzig, 2021
Uzunova H., Handels H., Ehrhardt J.
Unsupervised Pathology Detection in Medical Images using Learning-based Methods
In: Maier A., Deserno T.M., Handels H., Maier-Hein K.H., Palm C., Tolxdorff T. (eds.), Bildverarbeitung für die Medizin 2018, Erlangen, Informatik aktuell, Springer Vieweg, Berlin Heidelberg, 61-66, 2018
Uzunova H., Schultz S., Handels H., Ehrhardt J.
Unsupervised Pathology Detection in Medical Images using Conditional Variational Autoencoders
International Journal of Computer Assisted Radiology and Surgery, 14, 3, 451-461, 2019
Ulrich H., Kock-Schoppenhauer A.-K., Deppenwiese N., Gött R., Kern J., Lablans M., Majeed R.W., Stöhr M., Stausberg J., Varghese J. et al.
Understanding the Nature of Metadata – A Systematic Review
Journal of Medical Internet Research, In Press
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Uzunova H., Wilms M., Handels H., Ehrhardt J.
Training CNNs for Image Registration from Few Samples with Model-based Data Augmentation
In: Descoteaux M., et al (eds.), 20th International Conference on Medical Image Computing and Computer Assisted Intervention, MICCAI 2017, Quebec, Springer, Part I, LNCS 10433, 223-231, 2017
PDF
Ulrich H., Kern J., Kock-Schoppenhauer A.-K., Lablans M., Ingenerf J.
Towards a Federation of Metadata Repositories: Addressing Technical Interoperability
In: GMDS 2019, Dortmund, Stud Health Technol Inform, 267, 74-80, 2019
Wiedekopf J., Drenkhahn C.M., Rosenau L., Ulrich H., Kock-Schoppenhauer A.-K., Ingenerf J.
TerminoDiff – Detecting Semantic Differences in HL7 FHIR CodeSystems
Studies in Health Technology and Informatics, 294, 362--366, 2022
Abstract
Wiedekopf J., Ulrich H., Drenkhahn C.M., Kock-Schoppenhauer A.-K., Ingenerf J.
TermiCron – Bridging the Gap between FHIR Terminology Servers and Metadata Repositories
Studies in Health Technology and Informatics, 290, 71-75, 2022
Abstract
Ehrhardt J., Ahlborg M., Uzunova H., Buzug T.M., Handels H.
Temporal Polyrigid Registration for Patch-based MPI Reconstruction of Moving Objects
In: Knopp T., Buzug T.M. (eds.), 8th International Workshop on Magnetic Particle Imaging, IWMPI 2018, Hamburg, Infinite Science Publishing, 55-56, 2018
Ehrhardt J., Ahlborg M., Uzunova H., Buzug T.M., Handels H.
Temporal Polyrigid Registration for Patch-based MPI Reconstruction of Moving Objects
International Journal on Magnetic Particle Imaging, 5, 1, 2019
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Uzunova H., Wilms M., Forkert N.D., Handels H., Ehrhardt J.
A systematic comparison of generative models for medical images
International Journal of Computer Assisted Radiology and Surgery, 1-12, 2022
Uzunova H., Basso L., Ehrhardt J., Handels H.
Synthesis of annotated pathological retinal OCT data with pathology-induced deformations
In: Proc. SPIE 12033, Medical Imaging 2022: Computer-Aided Diagnosis, San Diego, United States, SPIE, 12033, 2022
Abstract
Uzunova H., Basso L., Ehrhardt J., Handels H.
Synthesis of annotated pathological retinal OCT data with pathology-induced deformations
In: Maier-Hein K., Deserno T., Handels H., Maier A., Palm C., Tolxdorff T. (eds.), Bildverarbeitung für die Medizin 2022, Heidelberg, Informatik Aktuell, Springer Vieweg, Wiesbaden, Abstract:197, 2022
Buzug T.M., Handels H., Klein S., Hübner C., Mertins A., Rostalski P. (eds.)
Student Conference Proceedings 2022: 11th C. on Medical Engineering Science and 7th C. on Medical Informatics and 5th C. on Biomedical Engineering and 4th C. on Auditory Technology and 2nd C. on Biophysics and 2nd C. on Robotics and Autonomous Systems
Infinite Science Publishing, Lübeck, 2022
Ulrich H., Germer S., Kock-Schoppenhauer A.-K., Kern J., Lablans M., Ingenerf J.
A Smart Mapping Editor for Standardised Data Transformation
Studies in Health Technology and Informatics, 270, 1185-1186, 2020
Andersen B., Ulrich H., Kock A.-K., Wrage J.-H., Ingenerf J.
Semantic interoperability in the OR.NET project on networking of medical devices and information systems — A requirements analysis
In: IEEE-EMBS International Conference on Biomedical and Health Informatics (BHI), Valencia, Spain, IEEE, 428-431, 2014
Kock-Schoppenhauer A.-K., Bruland P., Kadioglu D., Brammen H., Ulrich H., Kulbe K., Duhm-Harbeck P., Ingenerf J.
Scientific Challenge in eHealth: MAPPATHON- A Metadata Mapping Challenge
In: MedInfo, Lyon, Stud Health Technol Inform, 264, 1516-1517, 2019
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Uzunova H., Handels H., Ehrhardt J.
Robust Groupwise Affine Registration of Medical Images with Stochastic Optimization
In: Maier-Hein K.H., Deserno T.M., Handels H., Tolxdorff T. (eds.), Bildverarbeitung für die Medizin 2017, Heidelberg, Informatik aktuell, Springer Vieweg, Berlin Heidelberg, 62-67, 2017
Andersen B., Ulrich H., Rehmann D., Kock A.-K., Wrage J.-H., Ingenerf J.
Reporting Device Observations for semantic interoperability of surgical devices and clinical information systems
In: 37th Annual International Conference of the IEEE Engineering in Medicine and Biology Society (EMBC 2015), Milan, Italy, IEEE, 1725-1728, 2015
Mathes J.-H., Meincke O., Ulrich H., Ingenerf J.
Replicating and Synchronising a Medical Database in an Object Relational Mapping Context
In: Buzug T.M., Handels H. (eds.), Student Conference 2017, Medical Engineering Science and Medical Informatics, Lübeck, Infinite Science Publishing, 175-178, 2017
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Uzunova H., Kaftan P., Wilms M., Forkert N.D., Handels H., Ehrhardt J.
Quantitative Comparison of Generative Shape Models for Medical Images
In: Tolxdorff T., Deserno T.M., Handels H., Maier A., Maier-Hein K.H., Palm C. (eds.), Bildverarbeitung für die Medizin 2020, Berlin, Informatik aktuell, Springer Vieweg, Wiesbaden, 201-207, 2020
Ulrich H., Kern J., Tas D., Kock-Schoppenhauer A.-K., Ückert F., Ingenerf J., Lablans M.
QL4MDR: a GraphQL query language for ISO 11179-based metadata repositories
BMC Medical Informatics and Decision Making, 19, 1, 45, 2019
Abstract
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Simon F., Kock-Schoppenhauer A.-K., Ulrich H., Oberländer M., Maushagen R., Flügge F., Ingenerf J.
Provision of sensitive clinical and biobank data for research in compliance with data protection regulations
In: Buzug T.M., Handels H., Hübner C., Klein S., Mertins A., Rostalski P. (eds.), Student Conference Proceedings 2021: Medical Engineering Science, Medical Informatics, Biomedical Engineering, Auditory Technology, Biophysics and Robotics and Autonomous Systems, Lübeck, Infinite Science Publishing, 133-136, 2021
Wiedekopf J., Drenkhahn C.M., Ulrich H., Kock-Schoppenhauer A.-K., Ingenerf J.
Providing ART-DECOR ValueSets via FHIR Terminology Servers – A Technical Report
Studies in Health Technology and Informatics, 283, 127-135, 2021
Ulrich H., Uzunova H., Handels H., Ingenerf J.
Proposal of Semantic Annotation for German Metadata Using Bidirectional Recurrent Neural Networks.
Studies in health technology and informatics, 294, 357-361, 2022
Kock-Schoppenhauer A.-K., Hartung L., Ulrich H., Duhm-Harbeck P., Ingenerf J.
Practical Extension of Provenance to Healthcare Data Based on the W3C PROV Standard
Studies in health technology and informatics, 253, 28-32, 2018
Abstract
Andersen B., Kasparick M., Ulrich H., Schlichting S., Golatowski F., Timmermann D., Ingenerf J.
Point-of-Care Medical Devices and Systems Interoperability: A Mapping of ICE and FHIR
In: 2016 IEEE Conference on Standards for Communications and Networking (CSCN), Berlin, Germany, IEEE, 1-5, 2016
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Reimer N., Ulrich H., Busch H., Kock-Schoppenhauer A.-K., Ingenerf J.
openEHR Mapper – A Tool to Fusion Clinical and Genomic Data using the openEHR standard
Studies in Health Technology and Informatics, 278, 86-93, 2021
Drenkhahn C.M., Ulrich H., Ingenerf J.
An ontology-based tool to visually compare LOINC subsets
GMS Medizinische Informatik, Biometrie und Epidemiologie, 2021
Kock-Schoppenhauer A.-K., Kroll B., Lambarki M., Ulrich H., Stahl-Toyota S., Habermann J.K., Duhm-Harbeck P., Ingenerf J., Lablans M.
One Step Away from Technology but One Step Towards Domain Experts—MDRBridge: A Template-Based ISO 11179-Compliant Metadata Processing Pipeline
Methods of Information in Medicine, 58, S 02, e72-e79, 2019
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Andresen J., Uzunova H., Ehrhardt J., Handels H.
New Multiple Sclerosis Lesion Detection with Convolutional Neural Registration Networks
In: Commowick O., Cervenansky F., Cotton F., Dojat M. (eds.), Proceedings of the 2nd MICCAI challenge on multiple sclerosis new lesions segmentation challenge using a data management and processing infrastructure — MICCAI-MSSEG-2, 111-114, 2021
M
Uzunova H., Ehrhardt J., Jacob F., Frydrychowicz A., Handels H.
Multi-scale GANs for Memory-efficient Generation of High Resolution Medical Images
In: 22nd International Conference on Medical Image Computing and Computer Assisted Intervention, MICCAI 2019, Shenzen, China, 11769, 112-120, 2019
Uzunova H., Ehrhardt J., Jacob F., Frydrychowicz A., Handels H.
Multi-Scale GANs for Memory-Effcient Generation of High Resolution Medical Images
In: Tolxdorff T., Deserno T.M., Handels H., Maier A., Maier-Hein K.H., Palm C. (eds.), Bildverarbeitung für die Medizin 2020, Berlin, Informatik aktuell, Springer Vieweg, Wiesbaden, 286, 2020
Wilms M., Ha I.Y., Handels H., Heinrich M.P.
Model-based Regularisation for Respiratory Motion Estimation with Sparse Features in Image-guided Interventions
In: Ourselin S., Joskowicz L., Sabuncu M.R., Unal G., Wells W. (eds.), 19th International Conference on Medical Image Computing and Computer Assisted Intervention (MICCAI) 2016, Athen, Image Processing, Computer Vision, Pattern Recognition, and Graphics, Springer International Publishing, 9902, 89-97, 2016
PDF
Kern J., Tas D., Ulrich H., Schmidt E.E., Ingenerf J., Ückert F., Lablans M.
A Method to Use Metadata in Legacy Web Applications: The Samply.MDR.Injector
Studies in health technology and informatics, 253, 45-49, 2018
Abstract
Ulrich H., Kock A.-K., Duhm-Harbeck P., Habermann J.K., Ingenerf J.
Metadata Repository for Improved Data Sharing and Reuse Based on HL7 FHIR.
Studies in health technology and informatics, 228, 162-6, 2016
Abstract
Banach A., Kock-Schoppenhauer A.-K., Ulrich H., Ingenerf J.
MetaCheck – a Web Application for the Automatic Evaluation of Metadata in Healthcare
In: Buzug T.M., Handels H., Klein S., Mertins A. (eds.), Student Conference 2020, Medical Engineering Science, Medical Informatics, Biomedical Engineering and Auditory Technology, Lübeck, Infinite Science Publishing, 143-146, 2020
Uzunova H., Ehrhardt J., Handels H.
Memory-efficient GAN-based domain translation of high resolution 3D medical images
Computerized Medical Imaging and Graphics, 86, 101801, 2020
Kock-Schoppenhauer A.-K., Schreiweis B., Ulrich H., Reimer N., Wiedekopf J., Kinast B., Busch H., Bergh B., Ingenerf J.
Medical Data Engineering – Theory and Practice
In: Bellatreche L., Chernishev G., Corral A., Ouchani S., Vain J. (eds.), Advances in Model and Data Engineering in the Digitalization Era. MEDI 2021, Communications in Computer and Information Science, Springer, Cham, 1481, 2021
Deppenwiese N., Duhm-Harbeck P., Ingenerf J., Ulrich H.
MDRCupid - A Configurable Metadata Matching Toolbox
In: MedInfo, Lyon, Stud Health Technol Inform, 264, 88-92, 2019
Riech K., Ulrich H., Ingenerf J., Andersen B.
Mapping of Medical Device Data from IEEE 11073-10207 to HL7 FHIR
GMS Medizinische Informatik, Biometrie und Epidemiologie, 17, 2, 2021
Drenkhahn C.M., Ulrich H., Duhm-Harbeck P., Ingenerf J.
Mapping of Laboratory Services included in an Internal Catalog to SNOMED CT using the UMLS
In: Buzug T.M., Handels H., Klein S. (eds.), Student Conference 2018, Medical Engineering Science, Medical Informatics and Biomediacal Engineering, Lübeck, Infinite Science Publishing, 337-340, 2018
Ulrich H., Kock-Schoppenhauer A.-K., Andersen B., Duhm-Harbeck P., Ingenerf J.
Mapping clinical care and research data to HL7 FHIR to improve sharing and reuse
In: Informatics for Health 2017, Manchester Central, UK, 2017
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Carass A., Roy S., Jog A., Cuzzocreo J.L., Magrath E., Gherman A., Button J., Nguyen J., Prados F., Sudre C.H. et al.
Longitudinal multiple sclerosis lesion segmentation: Resource and challenge
NeuroImage, 148, 77-102, 2017
Kock-Schoppenhauer A.-K., Kamann C., Ulrich H., Duhm-Harbeck P., Ingenerf J.
Linked Data Applications through Ontology Based Data Access in Clinical Research
In: Informatics for Health 2017, Manchester Central, UK, Studies in Health Technology and Informatics, 235, 131-135, 2017
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Ablaß T., Ulrich H., Kock-Schoppenhauer A.-K., Simon F., Wagenzink S., Maushagen R., Habermann J.K., Ingenerf J.
Konzeption und Implementierung einer Geräteschnittstelle des TECAN EVO Aliquotierroboter im Biobankkontext
GMS Medizinische Informatik, Biometrie und Epidemiologie, 2021
Ververs S., Ulrich H., Kock A.-K., Ingenerf J.
Konvertierung von MIMIC-III-Daten zu FHIR
In: GMDS, Osnabrück, 2018
I
Oehm J., Ulrich H., Simon D., Ingenerf J.
An Investigation on Automated Consolidation for Medical Database Schemata
In: Buzug T.M., Handels H., Klein S. (eds.), Student Conference 2018, Medical Engineering Science, Medical Informatics and Biomediacal Engineering, Lübeck, Infinite Science Publishing, 361-364, 2018

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