Publikationen | Institute of Medical Informatics

MIDL 2021

International Conference on
Medical Imaging with Deep Learning
5. bis 7. Juli 2021

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Z

Zhuang X., Li L., Payer C., Štern D., Urschler M., Heinrich M.P., Oster J., Wang C., Smedby Ö., Bian C. et al.
Evaluation of algorithms for Multi-Modality Whole Heart Segmentation: An open-access grand challenge
Medical Image Analysis, 58, 101537, 2019

Zhibin X., Heinrich M.P.
Deep learning-based image registration for voxel-based morphometry
In: Buzug T.M., Handels H., Hübner C., Klein S., Mertins A., Rostalski P. (eds.), Student Conference Proceedings 2021: Medical Engineering Science, Medical Informatics, Biomedical Engineering, Auditory Technology, Biophysics and Robotics and Autonomous Systems, Lübeck, Infinite Science Publishing, 275-278, 2021

Zell F., Heinrich M.P.
Propagation of landmarks with a registration graph
In: Buzug T.M., Handels H. (eds.), Student Conference 2017, Medical Engineering Science and Medical Informatics, Lübeck, Infinite Science Publishing, 209-212, 2017

Zantop K., Kartalis N., Heinrich M.P., Moreno R.
Influence of Affine Image Registration on the Calculation of Diffusion Properties with a Kurtosis Model in Diffusion Weighted Imaging
In: Buzug T.M., Handels H., Klein S. (eds.), Student Conference 2018, Medical Engineering Science, Medical Informatics and Biomediacal Engineering, Lübeck, Infinite Science Publishing, 217-220, 2018

Zamnius D., Heinrich M.P., Lukas S., Siebert H.
Intertemporal Slice-to-Volume matching in Cardiac CT Perfusion Imaging
In: Buzug T.M., Handels H., Hübner C., Klein S., Mertins A., Rostalski P. (eds.), Student Conference Proceedings 2021: Medical Engineering Science, Medical Informatics, Biomedical Engineering, Auditory Technology, Biophysics and Robotics and Autonomous Systems, Lübeck, Infinite Science Publishing, 267-270, 2021

X

Xu Z., Lee C.P., Heinrich M.P., Modat M., Rueckert D., Ourselin S., Abramson R.G., Landman B.A.
Evaluation of Six Registration Methods for the Human Abdomen on Clinically Acquired CT.
IEEE transactions on bio-medical engineering, 63, 8, 1563-72, 2016

Xiao Y., Rivaz H., Chabanas M., Fortin M., Machado I., Ou Y., Heinrich M.P., Schnabel J.A., Zhong X., Maier A. et al.
Evaluation of MRI to Ultrasound Registration Methods for Brain Shift Correction: The CuRIOUS2018 Challenge
IEEE Transactions on Medical Imaging, 39, 3, 777-786, 2019

W

Winzeck S., Hakim A., McKinley R., Pinto J.A.A.D.S.R., Alves V., Silva C., Pisov M., Krivov E., Belyaev M., Monteiro M. et al.
ISLES 2016 and 2017-Benchmarking Ischemic Stroke Lesion Outcome Prediction Based on Multispectral MRI
Frontiers in Neurology, 9, 679, 2018

Wilms M., Ha I.Y., Handels H., Heinrich M.P.
Model-based Regularisation for Respiratory Motion Estimation with Sparse Features in Image-guided Interventions
In: Ourselin S., Joskowicz L., Sabuncu M.R., Unal G., Wells W. (eds.), 19th International Conference on Medical Image Computing and Computer Assisted Intervention (MICCAI) 2016, Athen, Image Processing, Computer Vision, Pattern Recognition, and Graphics, Springer International Publishing, 9902, 89-97, 2016

Wessel J., Heinrich M.P.
Multiple Landmark Localization in medical CT Scans using Deep Neural Networks with Heatmap Regression
In: Buzug T.M., Handels H., Klein S. (eds.), Student Conference 2018, Medical Engineering Science, Medical Informatics and Biomediacal Engineering, Lübeck, Infinite Science Publishing, 197-200, 2018

Weller D., Hansen L., Blendowski M., Heinrich M.P.
Transferring a Deep Cityscape Synthesis Approach to the Medical Domain
In: Buzug T.M., Handels H., Klein S. (eds.), Student Conference 2018, Medical Engineering Science, Medical Informatics and Biomediacal Engineering, Lübeck, Infinite Science Publishing, 91-94, 2018

V

Vogt N., Lorenz C., Brosch T., Heinrich M.P.
Deep learning for spinal centerline extraction
In: Buzug T.M., Handels H. (eds.), Student Conference 2017, Medical Engineering Science and Medical Informatics, Lübeck, Infinite Science Publishing, 229-232, 2017

T

Tanno R., Makropoulos A., Arslan S., Oktay O., Mischkewitz S., Al-Noor F., Oppenheimer J., Mandegaran R., Kainz B., Heinrich M.P.
AutoDVT: Joint Real-Time Classification for Vein Compressibility Analysis in Deep Vein Thrombosis Ultrasound Diagnostics
In: Medical Image Computing and Computer Assisted Intervention – MICCAI 2018, LNCS, 11071, 905-912, 2018

S

Soika K.L., Melnik S., Heinrich M.P.
Simulated Monochromatic X-ray Images by Forward Projection Utilizing the Lambert-Beer Law
In: Buzug T.M., Handels H. (eds.), Student Conference 2017, Medical Engineering Science and Medical Informatics, Lübeck, Infinite Science Publishing, 285-288, 2017

Sirocko J., Diesel J., Heinrich M.P.
Frequency based detection of regions of interest in videodata to estimate human breathing frequency
In: Buzug T.M., Handels H., Klein S., Mertins A. (eds.), Student Conference 2020, Medical Engineering Science, Medical Informatics, Biomedical Engineering and Auditory Technology, Lübeck, Infinite Science Publishing, 177-180, 2020

Siebert H., Hansen L., Heinrich M.P.
Evaluating Design Choices for Deep Learning Registration Networks - Architecture Matters
In: Palm C., Deserno T.M., Handels H., Maier A., Maier-Hein K.H., Tolxdorff T. (eds.), Bildverarbeitung für die Medizin 2021, Regensburg, Informatik aktuell, Springer Vieweg, Wiesbaden, 111-116, 2021

Siebert H., Rajamani K.T., Heinrich M.P.
Learning inverse consistent 3D groupwise registration with deforming autoencoders
In: SPIE Medical Imaging 2021, SPIE, 2021

Siebert H., Heinrich M.P.
Deep Groupwise Registration of MRI Using Deforming Autoencoders
In: Tolxdorff T., Deserno T.M., Handels H., Maier A., Maier-Hein K.H., Palm C. (eds.), Bildverarbeitung für die Medizin 2020, Berlin, Informatik aktuell, Springer Vieweg, Wiesbaden, 236-241, 2020

Siebert M., Hansen L., Diesel J., Heinrich M.P.
Human Pose Estimation with Hourglass Network and Convolutional Autoencoder
In: Buzug T.M., Handels H., Klein S., Mertins A. (eds.), Student Conference 2019, Medical Engineering Science, Medical Informatics, Biomedical Engineering and Auditory Technology, Lübeck, Infinite Science Publishing, 141-144, 2019

Schumacher M., Frey D., Ha I.Y., Genz A., Bade R., Heinrich M.P.
Semantically Guided 3D Abdominal Image Registration with Deep Pyramid Feature Learning
In: Palm C., Deserno T.M., Handels H., Maier A., Maier-Hein K.H., Tolxdorff T. (eds.), Bildverarbeitung für die Medizin 2021, Regensburg, Informatik aktuell, Springer Vieweg, Wiesbaden, 16-21, 2021

Schumacher M., Bade R., Genz A., Heinrich M.P.
Iterative 3D CNN based Segmentation of Vascular Trees in Liver CT
In: Maier-Hein K., Deserno T., Handels H., Maier A., Palm C., Tolxdorff T. (eds.), Bildverarbeitung für die Medizin 2022, Heidelberg, Informatik Aktuell, Springer Vieweg, Wiesbaden, 7-12, 2022

Schumacher M., Genz A., Heinrich M.P.
Weakly supervised pancreas segmentation based on class activation maps
In: SPIE Medical Imaging 2020: Image Processing, Houston, United States, 11313, 1131314, 2020

Schumacher M., Klinder T., Schmidt-Richberg A., Kabus S., Heinrich M.P.
Evaluation of medical image registration algorithms on pulmonary inhale and exhale CT scans
In: Buzug T.M., Handels H. (eds.), Student Conference 2016, Medical Engineering Science and Medical Informatics, Lübeck, Infinite Science Publishing, 191-194, 2016

Schnabel J.A., Heinrich M.P., Papież B.W., Brady M.J.
Advances and challenges in deformable image registration: From image fusion to complex motion modelling
Medical Image Analysis, Elsevier, 33, 145-148, 2016

Schlemper J., Oktay O., Schaap M., Heinrich M.P., Kainz B., Glocker B., Rueckert D.
Attention gated networks: Learning to leverage salient regions in medical images
Medical Image Analysis, 53, 197-207, 2019

Sambale M., Heinrich M.P., Sciretti D., Trujillo N.
Low-Rank Mask R-CNN
In: Buzug T.M., Handels H., Klein S. (eds.), Student Conference 2018, Medical Engineering Science, Medical Informatics and Biomediacal Engineering, Lübeck, Infinite Science Publishing, 193-196, 2018

R

Rüttgers S., Hocke J., Heinrich M.P.
Automatic segmentation of prostate zones in MRI data using different variants of the U-Net
In: Buzug T.M., Handels H., Klein S., Mertins A. (eds.), Student Conference 2020, Medical Engineering Science, Medical Informatics, Biomedical Engineering and Auditory Technology, Lübeck, Infinite Science Publishing, 169-172, 2020

Rüsch A., Maier O., Handels H.
Enabling on-Demand Features for Decision Forests - An Approach to Lesion Segmentation in MR Volumes
In: Buzug T.M., Birngruber R., Brinkmann R., Gehring H., Gutsmann T., Handels H., Heinrich M.P., et al (eds.), Student Conference 2015, Medical Engineering Science, Lübeck, 215-218, 2015

Rühaak J., Polzin T., Heldmann S., Simpson I., Handels H., Modersitzki J., Heinrich M.P.
Estimation of Large Motion in Lung CT by Integrating Regularized Keypoint Correspondences into Dense Deformable Registration
IEEE Transactions on Medical Imaging, 1746-1757, 2017

P

Puls D., Krüger J., Handels H.
An Efficient Implementation of an Affine Point-based Registration using the Expectation Maximization-ICP in C++
In: Buzug T.M., Birngruber R., Brinkmann R., Gehring H., Gutsmann T., Handels H., Heinrich M.P., et al (eds.), Student Conference 2015, Medical Engineering Science, Lübeck, 211-214, 2015

Polzin T., Niethammer N., Heinrich M.P., Handels H., Modersitzki J.
Memory Efficient LDDMM for Lung CT
In: 19th International Conference on Medical Image Computing and Computer Assisted Intervention (MICCAI) 2016, Athen, Springer, 28-36, 2016

Papiez B., Franklin J., Heinrich M.P., Gleeson F.V., Schnabel J.A.
Liver Motion Estimation via Locally Adaptive Over-Segmentation Regularization
In: Navab N., Hornegger J., Wells W., Frangi A.F. (eds.), 18th International Conference on Medical Image Computing and Computer-Assisted Intervention - MICCAI 2015, Munich, Lecture Notes in Computer Science, Springer, Berlin, LNCS Vol. 9351, 427-434, 2015

Papież B.W., Franklin J.M., Heinrich M.P., Gleeson F.V., Brady M., Schnabel J.A.
GIFTed Demons: deformable image registration with local structure-preserving regularization using supervoxels for liver applications
Journal of Medical Imaging, 5, 2, 024001, 2018

Papież B.W., Heinrich M.P., Fehrenbach J., Risser L., Schnabel J.A.
An implicit sliding-motion preserving regularisation via bilateral filtering for deformable image registration.
Medical image analysis, 18, 8, 1299-311, 2014

O

Ottink F.A., Koehler G., Heinrich M.P.
Towards Effective Contrastive Pretraining for Medical Image Segmentation
In: Buzug T.M., Handels H., Hübner C., Klein S., Mertins A., Rostalski P. (eds.), Student Conference Proceedings 2021: Medical Engineering Science, Medical Informatics, Biomedical Engineering, Auditory Technology, Biophysics and Robotics and Autonomous Systems, Lübeck, Infinite Science Publishing, 287-290, 2021

Ortmüller J., Werner R., Wilms M., Handels H., Gauer T.
Repiratory Surface Motion Measurement by Microsoft Kinect: Implementation and Evaluation of a clinical Setup
In: Buzug T.M., Birngruber R., Brinkmann R., Gehring H., Gutsmann T., Handels H., Heinrich M.P., et al (eds.), Student Conference 2015, Medical Engineering Science, Lübeck, 135-138, 2015

Oktay O., Schuh A., Rajchl M., Keraudren K., Gomez A., Heinrich M.P., Penney G., Rueckert D.
Structured Decision Forests For Multi-modal Ultrasound Image Registration
In: Navab N., Hornegger J., Wells W., Frangi A.F. (eds.), 18th International Conference on Medical Image Computing and Computer-Assisted Intervention - MICCAI 2015, Munich, Lecture Notes in Computer Science, Springer, Berlin, LNCS Vol. 9350, 363-371, 2015

Oktay O., Schlemper J., Folgoc L.L., Lee M., Heinrich M.P., Misawa K., Mori K., McDonagh S., Hammerla N.Y., Kainz B. et al.
Attention U-Net: Learning Where to Look for the Pancreas
In: Conference on Medical Imaging with Deep Learning (MIDL 2018), 2018

Oktay O., Bai W., Guerrero R., Rajchl M., de Marvao A., O’Regan D.P., Cook S.A., Heinrich M.P., Glocker B., Rueckert D.
Stratified Decision Forests for Accurate Anatomical Landmark Localization in Cardiac Images
IEEE Transactions on Medical Imaging, IEEE, 36, 1, 332-342, 2017

Oktay O., Ferrante E., Kamnitsas K., Heinrich M.P., Bai W., Caballero J., Cook S.A., de Marvao A., Dawes T., O'Regan D.P. et al.
Anatomically Constrained Neural Networks (ACNNs): Application to Cardiac Image Enhancement and Segmentation
IEEE Transactions on Medical Imaging, 37, 2, 384-395, 2018

M

Murphy K., van Ginneken B., Reinhardt J.M., Kabus S., Ding K., Deng X., Cao K., Du K., Christensen G.E., Garcia V. et al.
Evaluation of Registration Methods on Thoracic CT: The EMPIRE10 Challenge
IEEE Transactions on Medical Imaging, 30, 11, 1901-1920, 2011

Mollink J., Kleinnijenhuis M., vanvan Walsum A.-M.C., Sotiropoulos S.N., Cottaar M., Mirfin C., Heinrich M.P., Jenkinson M., Pallebage-Gamarallage M., Ansorge O. et al.
Evaluating fibre orientation dispersion in white matter: Comparison of diffusion MRI, histology and polarized light imaging
NeuroImage, Academic Press, 157, 561-574, 2017

Malterer S., Ehrhardt J., Frydrychowicz A., Oechtering T., Handels H.
Measurement ans Analysis of the repiration-driven Motion of the Pulmonary Artery
In: Buzug T.M., Birngruber R., Brinkmann R., Gehring H., Gutsmann T., Handels H., Heinrich M.P., et al (eds.), Student Conference 2015, Medical Engineering Science, Lübeck, 131-134, 2015

Maier O., Menze B.H., von der Gablentz J., Häni L., Heinrich M.P., Liebrand M., Winzeck S., Basit A., Bentley P., Chen L. et al.
ISLES 2015 - A public evaluation benchmark for ischemic stroke lesion segmentation from multispectral MRI
Medical Image Analysis, 35, 250-269, 2017

L

Lux P., Diesel J., Heinrich M.P.
2D Image Registration for Transforming Segmentation Masks within a Multi-Modal Camera Setup
In: Buzug T.M., Handels H., Klein S., Mertins A. (eds.), Student Conference 2019, Medical Engineering Science, Medical Informatics, Biomedical Engineering and Auditory Technology, Lübeck, Infinite Science Publishing, 129-132, 2019

Lucas C., Kemmling A., Bouteldja N., Aulmann L.F., Madany Mamlouk A., Heinrich M.P.
Learning to Predict Ischemic Stroke Growth on Acute CT Perfusion Data by Interpolating Low-Dimensional Shape Representations
Frontiers in Neurology, 9, 989, 2018

Lucas C., Aulmann L.F., Kemmling A., Mamlouk A.M., Heinrich M.P.
Estimation of the Principal Ischaemic Stroke Growth Directions for Predicting Tissue Outcomes
In: Brainlesion: Glioma, Multiple Sclerosis, Stroke and Traumatic Brain Injuries. BrainLes 2019, 69-79, 2020

Lucas C., Kemmling A., Madany Mamlouk A., Heinrich M.P.
Multi-scale neural network for automatic segmentation of ischemic strokes on acute perfusion images
In: 2018 IEEE 15th International Symposium on Biomedical Imaging (ISBI 2018)2018 IEEE 15th International Symposium on Biomedical Imaging (ISBI 2018), Washington, DC, IEEE, 1118-1121, 2018

Lucas C., Maier O., Heinrich M.P.
Shallow fully-connected neural networks for ischemic stroke-lesion segmentation in MRI
In: Maier-Hein K.H., Deserno T.M., Handels H., Tolxdorff T. (eds.), Bildverarbeitung in der Medizin 2017, Heidelberg, Informatik aktuell, Springer Vieweg, Berlin Heidelberg, 261-266, 2017

Lucas C., Schöttler J.J., Kemmling A., Aulmann L.F., Heinrich M.P.
Automatic Detection and Segmentation of the Acute Vessel Thrombus in Cerebral CT
In: Handels H., Deserno T.M., Maier A., Maier-Hein K.H., Palm C., Tolxdorff T. (eds.), Bildverarbeitung für die Medizin 2019, Lübeck, Informatik aktuell, Springer Vieweg, Wiesbaden, 74-79, 2019

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